Upload problems when switched to V3

Since we updated to V3 our company is at a standstill because we can no longer upload files. They worked the day before the update and haven't since the update. The log is below. Most of the time they just keep retrying but nothing ever happens.
[11:35:22] SmartFTP v3.0.1011.11
[11:35:24] Resolving host name "ftp.urpressing.com"
[11:35:24] Connecting to 66.179.92.10 Port: 21
[11:35:24] Connected to ftp.urpressing.com.
[11:35:24] 220 ProFTPD 1.2.10 Server (ftp.icglink.com) [66.179.92.10]
[11:35:24] USER urpressing
[11:35:24] 331 Password required for urpressing.
[11:35:24] PASS (hidden)
[11:35:24] 230 User urpressing logged in.
[11:35:24] SYST
[11:35:24] 215 UNIX Type: L8
[11:35:24] Detected Server Type: UNIX
[11:35:24] FEAT
[11:35:24] 211-Features:
[11:35:24] MDTM
[11:35:24] REST STREAM
[11:35:24] SIZE
[11:35:24] 211 End
[11:35:24] PWD
[11:35:24] 257 "/" is current directory.
[11:35:24] CWD /www/digital/12_17359
[11:35:24] 250 CWD command successful
[11:35:24] PWD
[11:35:24] 257 "/www/digital/12_17359" is current directory.
[11:35:24] TYPE A
[11:35:24] 200 Type set to A
[11:35:24] PORT 10,1,10,100,4,204
[11:35:24] 200 PORT command successful
[11:35:24] LIST -aL
[11:35:24] 150 Opening ASCII mode data connection for file list
[11:35:25] 121 bytes transferred. (3.81 KB/s) (31 ms)
[11:35:25] 226 Transfer complete.
[11:35:33] TYPE I
[11:35:33] 200 Type set to I
[11:35:33] SIZE 01 Day In The Life Of A Raincloud.mp3
[11:35:33] 550 01 Day In The Life Of A Raincloud.mp3: No such file or directory
[11:35:33] MDTM 01 Day In The Life Of A Raincloud.mp3
[11:35:33] 550 01 Day In The Life Of A Raincloud.mp3: No such file or directory
[11:35:33] CWD /www/digital/12_17359/01 Day In The Life Of A Raincloud.mp3
[11:35:33] 550 /www/digital/12_17359/01 Day In The Life Of A Raincloud.mp3: No such file or directory
[11:35:34] TYPE A
[11:35:34] 200 Type set to A
[11:35:34] PORT 10,1,10,100,4,205
[11:35:34] 200 PORT command successful
[11:35:34] LIST -aL
[11:35:34] 150 Opening ASCII mode data connection for file list
[11:35:34] 121 bytes transferred. (7.87 KB/s) (15 ms)
[11:35:34] 226 Transfer complete.
[11:35:34] TYPE I
[11:35:34] 200 Type set to I
[11:35:34] SIZE 02 Transparent Make-Believe.mp3
[11:35:34] 550 02 Transparent Make-Believe.mp3: No such file or directory
[11:35:34] MDTM 02 Transparent Make-Believe.mp3
[11:35:34] 550 02 Transparent Make-Believe.mp3: No such file or directory
[11:35:34] CWD /www/digital/12_17359/02 Transparent Make-Believe.mp3
[11:35:34] 550 /www/digital/12_17359/02 Transparent Make-Believe.mp3: No such file or directory
[11:35:34] SIZE 03 Cucumbersome.mp3
[11:35:34] 550 03 Cucumbersome.mp3: No such file or directory
[11:35:34] MDTM 03 Cucumbersome.mp3
[11:35:34] 550 03 Cucumbersome.mp3: No such file or directory
[11:35:34] CWD /www/digital/12_17359/03 Cucumbersome.mp3
[11:35:34] 550 /www/digital/12_17359/03 Cucumbersome.mp3: No such file or directory
[11:35:34] SIZE 04 Technicolor Autumn & Spring.mp3
[11:35:34] 550 04 Technicolor Autumn & Spring.mp3: No such file or directory
[11:35:34] MDTM 04 Technicolor Autumn & Spring.mp3
[11:35:34] 550 04 Technicolor Autumn & Spring.mp3: No such file or directory
[11:35:34] CWD /www/digital/12_17359/04 Technicolor Autumn & Spring.mp3
[11:35:34] 550 /www/digital/12_17359/04 Technicolor Autumn & Spring.mp3: No such file or directory
[11:35:34] SIZE 05 Karmic Engines.mp3
[11:35:34] 550 05 Karmic Engines.mp3: No such file or directory
[11:35:34] MDTM 05 Karmic Engines.mp3
[11:35:34] 550 05 Karmic Engines.mp3: No such file or directory
[11:35:34] CWD /www/digital/12_17359/05 Karmic Engines.mp3
[11:35:34] 550 /www/digital/12_17359/05 Karmic Engines.mp3: No such file or directory
[11:35:34] SIZE 06 Mouth Of Lions.mp3
[11:35:34] 550 06 Mouth Of Lions.mp3: No such file or directory
[11:35:34] MDTM 06 Mouth Of Lions.mp3
[11:35:34] 550 06 Mouth Of Lions.mp3: No such file or directory
[11:35:34] CWD /www/digital/12_17359/06 Mouth Of Lions.mp3
[11:35:34] 550 /www/digital/12_17359/06 Mouth Of Lions.mp3: No such file or directory
[11:35:34] SIZE 07 Father Time He Wastes.mp3
[11:35:34] 550 07 Father Time He Wastes.mp3: No such file or directory
[11:35:34] MDTM 07 Father Time He Wastes.mp3
[11:35:34] 550 07 Father Time He Wastes.mp3: No such file or directory
[11:35:34] CWD /www/digital/12_17359/07 Father Time He Wastes.mp3
[11:35:34] 550 /www/digital/12_17359/07 Father Time He Wastes.mp3: No such file or directory
[11:35:34] SIZE 08 Hallelujah.mp3
[11:35:34] 550 08 Hallelujah.mp3: No such file or directory
[11:35:34] MDTM 08 Hallelujah.mp3
[11:35:35] 550 08 Hallelujah.mp3: No such file or directory
[11:35:35] CWD /www/digital/12_17359/08 Hallelujah.mp3
[11:35:35] 550 /www/digital/12_17359/08 Hallelujah.mp3: No such file or directory
[11:35:35] SIZE 09 Fell Right Out Of Bed.mp3
[11:35:35] 550 09 Fell Right Out Of Bed.mp3: No such file or directory
[11:35:35] MDTM 09 Fell Right Out Of Bed.mp3
[11:35:35] 550 09 Fell Right Out Of Bed.mp3: No such file or directory
[11:35:35] CWD /www/digital/12_17359/09 Fell Right Out Of Bed.mp3
[11:35:35] 550 /www/digital/12_17359/09 Fell Right Out Of Bed.mp3: No such file or directory
[11:35:35] SIZE 10 The Golden Era.mp3
[11:35:35] 550 10 The Golden Era.mp3: No such file or directory
[11:35:35] MDTM 10 The Golden Era.mp3
[11:35:35] 550 10 The Golden Era.mp3: No such file or directory
[11:35:35] CWD /www/digital/12_17359/10 The Golden Era.mp3
[11:35:35] 550 /www/digital/12_17359/10 The Golden Era.mp3: No such file or directory
[11:35:35] SIZE 11 Spiraling Staircase.mp3
[11:35:35] 550 11 Spiraling Staircase.mp3: No such file or directory
[11:35:35] MDTM 11 Spiraling Staircase.mp3
[11:35:35] 550 11 Spiraling Staircase.mp3: No such file or directory
[11:35:35] CWD /www/digital/12_17359/11 Spiraling Staircase.mp3
[11:35:35] 550 /www/digital/12_17359/11 Spiraling Staircase.mp3: No such file or directory
[11:35:35] SIZE 12 Jane Jubilee.mp3
[11:35:35] 550 12 Jane Jubilee.mp3: No such file or directory
[11:35:35] MDTM 12 Jane Jubilee.mp3
[11:35:35] 550 12 Jane Jubilee.mp3: No such file or directory
[11:35:35] CWD /www/digital/12_17359/12 Jane Jubilee.mp3
[11:35:35] 550 /www/digital/12_17359/12 Jane Jubilee.mp3: No such file or directory
[11:35:35] The operation has been added to the Transfer Queue. Check the Transfer Queue for the status.

I'm having similar problems, I think. With V3 I can't just "right click>edit>skip>(edit file)>(save file)>upload" anymore.