No relation between the template and files transferred

Hello Smartftp support
I came back because my issue still not resolved.
I have 21 folders on my project every folder contents seven files , total files transferred to server is 653 byte
All file's like :-
for example :- fishing folder contents:-
file rendomlink
file index
file fly fishing
file fishin knots
file fishing
file definition
file bass fishing and so on
All these files from folders are uploaded to server and refreshed . and all these files from my output , the path is :-
C:\document and setting\output
But the issue is no relation between these files and template which already on the server you can see the URL:-
http://www.fishing-rod-website.com /the template was empty and the files already on the server, can you help me to solve the problem fr add files to the template

Regards
Hafiz

I'm sorry but I do not understand your problem.